Changelog

This project adheres to Semantic Versioning and Keep a Changelog format.

[0.6.0] - 2019-08-05

Added

  • list and listr subcommand results can be restricted to a specific genome with -g/--genome options
  • remove subcommand will remove an asset from disk and config
  • Added recipes for new assets: refgene_anno, ensembl_gtf and feat_annotation
  • build now populates the asset_description field in the config with corresponding value from the recipe

[0.5.0] - 2019-07-11

Changed

  • refgenie build uses dict-like recipies for build instructions
  • Major genome configuration file format changes

    • Added config_version entry
    • Added assets section in genomes section
  • recipes can now include container images

Added

  • genomes can have attributes, like description
  • Added recipes for new assets salmon, bwa, star, gene_anno, and tss_annotation.

[0.4.4] - 2019-07-01

Added

  • add subcommand

[0.4.3] - 2019-06-21

Changed

  • Build process now builds individual assets

[0.4.2] - 2019-06-18

Added

  • seek subcommand

Changed

  • Require config file arg for init.

Fixed

  • Pick up env var for init config.

[0.4.1] -- 2019-06-14

Fixed

  • Use newer yacman and regain init functionality.

[0.4.0] -- 2019-06-14

Added

  • Added new commands init, pull, list and listr
  • Added connectivity option with remote data sources

[0.3.2] -- 2019-05-14

Fixed

  • Fixed a bug with packaging

[0.3.0] -- 2019-05-10

Added

  • Implemented installable CLI
  • Packaged for release on PyPI
  • Wrote comprehensive docs

Fixed

  • Fixed naming of .fq.gz files

[0.2.0] -- 2017-03-08

Added

  • Transition release as a functional script

[0.1.0] -- 2016-11-11

  • Project started